STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_962Polysaccharide deacetylase family protein, PEP-CTERM locus subfamily. (292 aa)    
Predicted Functional Partners:
APF17841.1
FemAB-related protein, PEP-CTERM system-associated.
 
     0.779
APF17850.1
Putative O-glycosylation ligase, exosortase A-associated.
  
     0.768
APF17859.1
Hypothetical protein.
 
    0.731
APF17857.1
Glycosyltransferase involved in cell wall bisynthesis.
 
    0.697
APF20135.1
Polysaccharide deacetylase.
 
     0.675
Cabys_961
Helix-turn-helix domain-containing protein.
       0.648
Cabys_963
Two-component system, NtrC family, response regulator/two-component system, NtrC family, response regulator PilR.
       0.625
APF18592.1
Outer membrane receptor protein, mostly Fe transport.
  
     0.597
APF17852.1
Sugar transferase, PEP-CTERM/EpsH1 system associated.
 
    0.542
APF18891.1
Glycopeptide antibiotics resistance protein.
 
     0.527
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.