STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Cabys_993Transcriptional regulator, LacI family. (340 aa)    
Predicted Functional Partners:
APF18488.1
Glutamate synthase (NADH) large subunit.
    
 
 0.852
APF18136.1
Amino acid adenylation domain-containing protein.
    
 
 0.817
APF20634.1
Phosphocarrier protein.
   
 
 0.812
APF20225.1
DNA-binding transcriptional regulator, LacI/PurR family.
  
     0.768
Cabys_994
Por secretion system C-terminal sorting domain-containing protein.
 
    0.593
Cabys_995
Hypothetical protein.
       0.536
APF18438.1
Transcriptional regulator, DeoR family.
  
  
 0.438
Your Current Organism:
Caldithrix abyssi
NCBI taxonomy Id: 880073
Other names: C. abyssi DSM 13497, Caldithrix abyssi DSM 13497, Caldithrix abyssi LF13, Caldithrix abyssi str. DSM 13497, Caldithrix abyssi strain DSM 13497
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.