STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF12254.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (480 aa)    
Predicted Functional Partners:
AHF12253.1
TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.934
AHF13733.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.709
AHF12622.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.708
AHF12255.1
Flavodoxin; Low-potential electron donor to a number of redox enzymes. Belongs to the flavodoxin family.
       0.668
AHF13483.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.631
AHF12388.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.621
AHF12623.1
TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.607
AHF11933.1
Carbohydrate-binding protein SusC; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.594
AHF12444.1
Ligand-gated channel protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
   0.593
AHF12128.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.579
Your Current Organism:
Barnesiella viscericola
NCBI taxonomy Id: 880074
Other names: B. viscericola DSM 18177, Barnesiella viscericola C46, Barnesiella viscericola DSM 18177, Barnesiella viscericola JCM 13660, Barnesiella viscericola str. DSM 18177, Barnesiella viscericola strain DSM 18177
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.