STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF13817.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (517 aa)    
Predicted Functional Partners:
AHF12619.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.642
AHF12623.1
TonB-linked outer membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.603
AHF12622.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.577
AHF13818.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.561
AHF12620.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.492
AHF12618.1
alpha-N-acetylglucosaminidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.484
AHF12621.1
Endonuclease; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.480
AHF12615.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.419
AHF12616.1
Gluconate:proton symporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.419
AHF12617.1
Glycerate kinase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glycerate kinase type-1 family.
       0.419
Your Current Organism:
Barnesiella viscericola
NCBI taxonomy Id: 880074
Other names: B. viscericola DSM 18177, Barnesiella viscericola C46, Barnesiella viscericola DSM 18177, Barnesiella viscericola JCM 13660, Barnesiella viscericola str. DSM 18177, Barnesiella viscericola strain DSM 18177
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.