STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF13939.1Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+. (464 aa)    
Predicted Functional Partners:
AHF13180.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.740
AHF13178.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.599
AHF13179.1
UDP pyrophosphate synthase; Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids.
  
    0.597
AHF13502.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.575
AHF12146.1
Patatin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.512
AHF12028.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.488
AHF12813.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.488
AHF12899.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.488
AHF13177.1
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
       0.455
AHF13181.1
Membrane protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.430
Your Current Organism:
Barnesiella viscericola
NCBI taxonomy Id: 880074
Other names: B. viscericola DSM 18177, Barnesiella viscericola C46, Barnesiella viscericola DSM 18177, Barnesiella viscericola JCM 13660, Barnesiella viscericola str. DSM 18177, Barnesiella viscericola strain DSM 18177
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