STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AHF13217.1Fuculose phosphate aldolase; Derived by automated computational analysis using gene prediction method: Protein Homology. (212 aa)    
Predicted Functional Partners:
AHF13218.1
L-fuculose kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.931
AHF13216.1
L-1,2-propanediol oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.825
fucI
Fucose isomerase; Converts the aldose L-fucose into the corresponding ketose L- fuculose.
 
  
 0.766
AHF13219.1
Major facilitator transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.681
metH
B12-dependent methionine synthase; Catalyzes the transfer of a methyl group from methyl- cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Subsequently, remethylates the cofactor using methyltetrahydrofolate.
  
  
 0.569
AHF13214.1
GntR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.562
AHF12987.1
Carboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.509
AHF13168.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
   
 0.491
AHF11998.1
Sensor histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.483
AHF12409.1
Aspartokinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.452
Your Current Organism:
Barnesiella viscericola
NCBI taxonomy Id: 880074
Other names: B. viscericola DSM 18177, Barnesiella viscericola C46, Barnesiella viscericola DSM 18177, Barnesiella viscericola JCM 13660, Barnesiella viscericola str. DSM 18177, Barnesiella viscericola strain DSM 18177
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