Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KOY63680.1Type ii secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (518 aa)    
Predicted Functional Partners:
KOY63679.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.955
hofC
Type IV pilin biosynthesis protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.927
KOY63687.1
Prepilin; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.875
pilQ
Transporter; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 
 0.826
pilV
Secondary type iv prepilin; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.784
KOY63683.1
Pilus assembly protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.775
KOY63018.1
Pilus assembly protein PilR; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.736
KOY61589.1
General secretion pathway protein GspF; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.722
pilO2
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.711
pilP
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.710
Your Current Organism:
Photorhabdus heterorhabditis
NCBI taxonomy Id: 880156
Other names: ATCC BAA-2479, DSM 25263, P. heterorhabditis, Photorhabdus heterorhabditis Ferreira et al. 2014, Photorhabdus sp. Q614, Photorhabdus sp. Q614(2009), Photorhabdus sp. SF41, Photorhabdus sp. SF783, strain SF41
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