D8QSX9_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8QSX9_SELML

2OG-FeII_Oxy_2 domain-containing protein. (268 aa)

Predicted Functional Partners:

D8QXG8_SELML

0.572

D8SE14_SELML

0.572

D8SSM9_SELML

0.544

D8SZC6_SELML

0.544

D8SCM2_SELML

0.538

D8SGU4_SELML

0.538

D8RP09_SELML

0.527

D8TCN2_SELML

0.527

D8QY26_SELML

0.524

D8RUT1_SELML

0.524

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QSX9_SELML	D8QXG8_SELML	D8QSX9	D8QXG8	2OG-FeII_Oxy_2 domain-containing protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.572
D8QSX9_SELML	D8QY26_SELML	D8QSX9	D8QY26	2OG-FeII_Oxy_2 domain-containing protein.	MTS domain-containing protein.	0.524
D8QSX9_SELML	D8RP09_SELML	D8QSX9	D8RP09	2OG-FeII_Oxy_2 domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.527
D8QSX9_SELML	D8RUT1_SELML	D8QSX9	D8RUT1	2OG-FeII_Oxy_2 domain-containing protein.	MTS domain-containing protein.	0.524
D8QSX9_SELML	D8SCM2_SELML	D8QSX9	D8SCM2	2OG-FeII_Oxy_2 domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.538
D8QSX9_SELML	D8SE14_SELML	D8QSX9	D8SE14	2OG-FeII_Oxy_2 domain-containing protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.572
D8QSX9_SELML	D8SGU4_SELML	D8QSX9	D8SGU4	2OG-FeII_Oxy_2 domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.538
D8QSX9_SELML	D8SSM9_SELML	D8QSX9	D8SSM9	2OG-FeII_Oxy_2 domain-containing protein.	Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.	0.544
D8QSX9_SELML	D8SZC6_SELML	D8QSX9	D8SZC6	2OG-FeII_Oxy_2 domain-containing protein.	Deoxyhypusine hydroxylase; Catalyzes the hydroxylation of the N(6)-(4-aminobutyl)-L- lysine intermediate to form hypusine, an essential post-translational modification only found in mature eIF-5A factor; Belongs to the deoxyhypusine hydroxylase family.	0.544
D8QSX9_SELML	D8TCN2_SELML	D8QSX9	D8TCN2	2OG-FeII_Oxy_2 domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.527
D8QXG8_SELML	D8QSX9_SELML	D8QXG8	D8QSX9	Uncharacterized protein; Belongs to the MT-A70-like family.	2OG-FeII_Oxy_2 domain-containing protein.	0.572
D8QXG8_SELML	D8QY26_SELML	D8QXG8	D8QY26	Uncharacterized protein; Belongs to the MT-A70-like family.	MTS domain-containing protein.	0.548
D8QXG8_SELML	D8RUT1_SELML	D8QXG8	D8RUT1	Uncharacterized protein; Belongs to the MT-A70-like family.	MTS domain-containing protein.	0.548
D8QXG8_SELML	D8SCM2_SELML	D8QXG8	D8SCM2	Uncharacterized protein; Belongs to the MT-A70-like family.	Fe2OG dioxygenase domain-containing protein.	0.542
D8QXG8_SELML	D8SGU4_SELML	D8QXG8	D8SGU4	Uncharacterized protein; Belongs to the MT-A70-like family.	Fe2OG dioxygenase domain-containing protein.	0.542
D8QY26_SELML	D8QSX9_SELML	D8QY26	D8QSX9	MTS domain-containing protein.	2OG-FeII_Oxy_2 domain-containing protein.	0.524
D8QY26_SELML	D8QXG8_SELML	D8QY26	D8QXG8	MTS domain-containing protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.548
D8QY26_SELML	D8RUT1_SELML	D8QY26	D8RUT1	MTS domain-containing protein.	MTS domain-containing protein.	0.543
D8QY26_SELML	D8SCM2_SELML	D8QY26	D8SCM2	MTS domain-containing protein.	Fe2OG dioxygenase domain-containing protein.	0.528
D8QY26_SELML	D8SE14_SELML	D8QY26	D8SE14	MTS domain-containing protein.	Uncharacterized protein; Belongs to the MT-A70-like family.	0.548