D8QWI6_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8QWI6_SELML

Uncharacterized protein. (351 aa)

Predicted Functional Partners:

D8SI92_SELML

0.703

D8S7J7_SELML

0.578

D8T3X2_SELML

0.578

D8R5F3_SELML

0.565

D8RFR1_SELML

0.533

D8SP61_SELML

0.533

D8RKM3_SELML

0.497

D8T7N7_SELML

0.497

D8QZ78_SELML

0.496

D8R9Y5_SELML

0.496

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QWI6_SELML	D8QZ78_SELML	D8QWI6	D8QZ78	Uncharacterized protein.	RanBP2-type domain-containing protein.	0.496
D8QWI6_SELML	D8R5F3_SELML	D8QWI6	D8R5F3	Uncharacterized protein.	Uncharacterized protein.	0.565
D8QWI6_SELML	D8R9Y5_SELML	D8QWI6	D8R9Y5	Uncharacterized protein.	RanBP2-type domain-containing protein.	0.496
D8QWI6_SELML	D8RFR1_SELML	D8QWI6	D8RFR1	Uncharacterized protein.	Peptide-methionine (R)-S-oxide reductase; Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R- enantiomer.	0.533
D8QWI6_SELML	D8RKM3_SELML	D8QWI6	D8RKM3	Uncharacterized protein.	Uncharacterized protein.	0.497
D8QWI6_SELML	D8S7J7_SELML	D8QWI6	D8S7J7	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.578
D8QWI6_SELML	D8SI92_SELML	D8QWI6	D8SI92	Uncharacterized protein.	Uncharacterized protein.	0.703
D8QWI6_SELML	D8SP61_SELML	D8QWI6	D8SP61	Uncharacterized protein.	Peptide-methionine (R)-S-oxide reductase; Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R- enantiomer.	0.533
D8QWI6_SELML	D8T3X2_SELML	D8QWI6	D8T3X2	Uncharacterized protein.	Hist_deacetyl domain-containing protein.	0.578
D8QWI6_SELML	D8T7N7_SELML	D8QWI6	D8T7N7	Uncharacterized protein.	Uncharacterized protein.	0.497
D8QZ78_SELML	D8QWI6_SELML	D8QZ78	D8QWI6	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.496
D8QZ78_SELML	D8RKM3_SELML	D8QZ78	D8RKM3	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.522
D8QZ78_SELML	D8T7N7_SELML	D8QZ78	D8T7N7	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.522
D8R5F3_SELML	D8QWI6_SELML	D8R5F3	D8QWI6	Uncharacterized protein.	Uncharacterized protein.	0.565
D8R5F3_SELML	D8RFR1_SELML	D8R5F3	D8RFR1	Uncharacterized protein.	Peptide-methionine (R)-S-oxide reductase; Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R- enantiomer.	0.632
D8R5F3_SELML	D8SP61_SELML	D8R5F3	D8SP61	Uncharacterized protein.	Peptide-methionine (R)-S-oxide reductase; Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R- enantiomer.	0.632
D8R9Y5_SELML	D8QWI6_SELML	D8R9Y5	D8QWI6	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.496
D8R9Y5_SELML	D8RKM3_SELML	D8R9Y5	D8RKM3	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.522
D8R9Y5_SELML	D8T7N7_SELML	D8R9Y5	D8T7N7	RanBP2-type domain-containing protein.	Uncharacterized protein.	0.522
D8RFR1_SELML	D8QWI6_SELML	D8RFR1	D8QWI6	Peptide-methionine (R)-S-oxide reductase; Catalyzes the reduction of methionine sulfoxide (MetSO) to methionine in proteins. Plays a protective role against oxidative stress by restoring activity to proteins that have been inactivated by methionine oxidation. MSRB family specifically reduces the MetSO R- enantiomer.	Uncharacterized protein.	0.533