D8R1C7_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8R1C7_SELML

Uncharacterized protein; Belongs to the sterol desaturase family. (238 aa)

Predicted Functional Partners:

D8S8X5_SELML

0.961

D8QW34_SELML

0.781

D8RT32_SELML

0.781

D8SAT8_SELML

0.781

D8SQH6_SELML

0.781

D8S0R6_SELML

0.688

D8SBE2_SELML

0.688

D8QSX7_SELML

0.533

D8QW96_SELML

0.533

UBC28-4

0.533

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QSX7_SELML	D8QW34_SELML	D8QSX7	D8QW34	Uncharacterized protein.	Uncharacterized protein.	0.689
D8QSX7_SELML	D8R1C7_SELML	D8QSX7	D8R1C7	Uncharacterized protein.	Uncharacterized protein; Belongs to the sterol desaturase family.	0.533
D8QSX7_SELML	D8RT32_SELML	D8QSX7	D8RT32	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.689
D8QSX7_SELML	D8S0R6_SELML	D8QSX7	D8S0R6	Uncharacterized protein.	Ubiquitin-conjugating enzyme 25, E2-like protein.	0.849
D8QSX7_SELML	D8S8X5_SELML	D8QSX7	D8S8X5	Uncharacterized protein.	Ribosomal_S27 domain-containing protein.	0.887
D8QSX7_SELML	D8SAT8_SELML	D8QSX7	D8SAT8	Uncharacterized protein.	F-box domain-containing protein.	0.689
D8QSX7_SELML	D8SBE2_SELML	D8QSX7	D8SBE2	Uncharacterized protein.	Ubiquitin-conjugating enzyme 25, E2-like protein.	0.849
D8QSX7_SELML	D8SQH6_SELML	D8QSX7	D8SQH6	Uncharacterized protein.	Ubiquitin-like domain-containing protein.	0.689
D8QW34_SELML	D8QSX7_SELML	D8QW34	D8QSX7	Uncharacterized protein.	Uncharacterized protein.	0.689
D8QW34_SELML	D8QW96_SELML	D8QW34	D8QW96	Uncharacterized protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein.	0.689
D8QW34_SELML	D8R1C7_SELML	D8QW34	D8R1C7	Uncharacterized protein.	Uncharacterized protein; Belongs to the sterol desaturase family.	0.781
D8QW34_SELML	D8S0R6_SELML	D8QW34	D8S0R6	Uncharacterized protein.	Ubiquitin-conjugating enzyme 25, E2-like protein.	0.970
D8QW34_SELML	D8S8X5_SELML	D8QW34	D8S8X5	Uncharacterized protein.	Ribosomal_S27 domain-containing protein.	0.997
D8QW34_SELML	D8SBE2_SELML	D8QW34	D8SBE2	Uncharacterized protein.	Ubiquitin-conjugating enzyme 25, E2-like protein.	0.970
D8QW34_SELML	UBC28-4	D8QW34	D8QWU7	Uncharacterized protein.	Ubiquitin-conjugating enzyme 28, E2; Belongs to the ubiquitin-conjugating enzyme family.	0.689
D8QW96_SELML	D8QW34_SELML	D8QW96	D8QW34	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein.	0.689
D8QW96_SELML	D8R1C7_SELML	D8QW96	D8R1C7	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Uncharacterized protein; Belongs to the sterol desaturase family.	0.533
D8QW96_SELML	D8RT32_SELML	D8QW96	D8RT32	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.689
D8QW96_SELML	D8S0R6_SELML	D8QW96	D8S0R6	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ubiquitin-conjugating enzyme 25, E2-like protein.	0.849
D8QW96_SELML	D8S8X5_SELML	D8QW96	D8S8X5	UBIQUITIN_CONJUGAT_2 domain-containing protein.	Ribosomal_S27 domain-containing protein.	0.887