D8R237_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8R237_SELML

Lipase_GDSL domain-containing protein. (362 aa)

Predicted Functional Partners:

D8RDL9_SELML

0.504

D8RA33_SELML

0.489

D8R512_SELML

0.481

D8RPX7_SELML

0.460

D8QR66_SELML

0.411

D8RFX7_SELML

0.404

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QR66_SELML	D8R237_SELML	D8QR66	D8R237	Sm domain-containing protein.	Lipase_GDSL domain-containing protein.	0.411
D8QR66_SELML	D8R512_SELML	D8QR66	D8R512	Sm domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.999
D8QR66_SELML	D8RA33_SELML	D8QR66	D8RA33	Sm domain-containing protein.	Small nuclear ribonucleoprotein G.	0.999
D8QR66_SELML	D8RDL9_SELML	D8QR66	D8RDL9	Sm domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.999
D8QR66_SELML	D8RFX7_SELML	D8QR66	D8RFX7	Sm domain-containing protein.	Tr-type G domain-containing protein.	0.995
D8QR66_SELML	D8RPX7_SELML	D8QR66	D8RPX7	Sm domain-containing protein.	Sm domain-containing protein.	0.999
D8R237_SELML	D8QR66_SELML	D8R237	D8QR66	Lipase_GDSL domain-containing protein.	Sm domain-containing protein.	0.411
D8R237_SELML	D8R512_SELML	D8R237	D8R512	Lipase_GDSL domain-containing protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.481
D8R237_SELML	D8RA33_SELML	D8R237	D8RA33	Lipase_GDSL domain-containing protein.	Small nuclear ribonucleoprotein G.	0.489
D8R237_SELML	D8RDL9_SELML	D8R237	D8RDL9	Lipase_GDSL domain-containing protein.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.504
D8R237_SELML	D8RFX7_SELML	D8R237	D8RFX7	Lipase_GDSL domain-containing protein.	Tr-type G domain-containing protein.	0.404
D8R237_SELML	D8RPX7_SELML	D8R237	D8RPX7	Lipase_GDSL domain-containing protein.	Sm domain-containing protein.	0.460
D8R512_SELML	D8QR66_SELML	D8R512	D8QR66	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Sm domain-containing protein.	0.999
D8R512_SELML	D8R237_SELML	D8R512	D8R237	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Lipase_GDSL domain-containing protein.	0.481
D8R512_SELML	D8RA33_SELML	D8R512	D8RA33	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein G.	0.999
D8R512_SELML	D8RDL9_SELML	D8R512	D8RDL9	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.	0.999
D8R512_SELML	D8RFX7_SELML	D8R512	D8RFX7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Tr-type G domain-containing protein.	0.996
D8R512_SELML	D8RPX7_SELML	D8R512	D8RPX7	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	Sm domain-containing protein.	0.999
D8RA33_SELML	D8QR66_SELML	D8RA33	D8QR66	Small nuclear ribonucleoprotein G.	Sm domain-containing protein.	0.999
D8RA33_SELML	D8R237_SELML	D8RA33	D8R237	Small nuclear ribonucleoprotein G.	Lipase_GDSL domain-containing protein.	0.489