D8R9V0_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8R9V0_SELML

CutC domain-containing protein. (257 aa)

Predicted Functional Partners:

D8R4T6_SELML

0.577

D8RUJ3_SELML

0.573

D8RB16_SELML

0.572

D8RHG2_SELML

0.572

D8QRE3_SELML

0.564

D8R664_SELML

0.564

D8SGD2_SELML

0.564

D8S967_SELML

0.552

D8SYM3_SELML

0.552

D8QN51_SELML

0.539

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QN51_SELML	D8QRE3_SELML	D8QN51	D8QRE3	Uncharacterized protein.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.560
D8QN51_SELML	D8R4T6_SELML	D8QN51	D8R4T6	Uncharacterized protein.	IGPS domain-containing protein.	0.644
D8QN51_SELML	D8R664_SELML	D8QN51	D8R664	Uncharacterized protein.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.560
D8QN51_SELML	D8R9V0_SELML	D8QN51	D8R9V0	Uncharacterized protein.	CutC domain-containing protein.	0.539
D8QN51_SELML	D8SGD2_SELML	D8QN51	D8SGD2	Uncharacterized protein.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.560
D8QRE3_SELML	D8QN51_SELML	D8QRE3	D8QN51	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	Uncharacterized protein.	0.560
D8QRE3_SELML	D8R664_SELML	D8QRE3	D8R664	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.900
D8QRE3_SELML	D8R9V0_SELML	D8QRE3	D8R9V0	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	CutC domain-containing protein.	0.564
D8QRE3_SELML	D8SGD2_SELML	D8QRE3	D8SGD2	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.900
D8R4T6_SELML	D8QN51_SELML	D8R4T6	D8QN51	IGPS domain-containing protein.	Uncharacterized protein.	0.644
D8R4T6_SELML	D8R9V0_SELML	D8R4T6	D8R9V0	IGPS domain-containing protein.	CutC domain-containing protein.	0.577
D8R4T6_SELML	D8RB16_SELML	D8R4T6	D8RB16	IGPS domain-containing protein.	Uncharacterized protein.	0.652
D8R4T6_SELML	D8RHG2_SELML	D8R4T6	D8RHG2	IGPS domain-containing protein.	Uncharacterized protein.	0.652
D8R4T6_SELML	D8S967_SELML	D8R4T6	D8S967	IGPS domain-containing protein.	HMA domain-containing protein.	0.536
D8R4T6_SELML	D8SYM3_SELML	D8R4T6	D8SYM3	IGPS domain-containing protein.	HMA domain-containing protein.	0.536
D8R664_SELML	D8QN51_SELML	D8R664	D8QN51	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	Uncharacterized protein.	0.560
D8R664_SELML	D8QRE3_SELML	D8R664	D8QRE3	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.900
D8R664_SELML	D8R9V0_SELML	D8R664	D8R9V0	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	CutC domain-containing protein.	0.564
D8R664_SELML	D8SGD2_SELML	D8R664	D8SGD2	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	S-adenosylmethionine synthase; Catalyzes the formation of S-adenosylmethionine from methionine and ATP.	0.900
D8R9V0_SELML	D8QN51_SELML	D8R9V0	D8QN51	CutC domain-containing protein.	Uncharacterized protein.	0.539