D8RF07_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8RF07_SELML

Uncharacterized protein. (484 aa)

Predicted Functional Partners:

D8QVG5_SELML

0.650

D8SAH8_SELML

0.650

D8R2U1_SELML

0.618

D8RKQ8_SELML

0.582

D8QUC4_SELML

0.552

D8QUV3_SELML

0.552

D8SCN8_SELML

0.480

D8R5L2_SELML

0.459

D8SFD4_SELML

0.459

ASH2-like

0.416

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ASH2-like	D8QUC4_SELML	D8QUE8	D8QUC4	Uncharacterized protein ASH2-like.	Uncharacterized protein.	0.843
ASH2-like	D8QUV3_SELML	D8QUE8	D8QUV3	Uncharacterized protein ASH2-like.	Uncharacterized protein.	0.843
ASH2-like	D8R2U1_SELML	D8QUE8	D8R2U1	Uncharacterized protein ASH2-like.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.969
ASH2-like	D8RF07_SELML	D8QUE8	D8RF07	Uncharacterized protein ASH2-like.	Uncharacterized protein.	0.416
ASH2-like	D8RKQ8_SELML	D8QUE8	D8RKQ8	Uncharacterized protein ASH2-like.	VEFS-Box domain-containing protein.	0.435
D8QUC4_SELML	ASH2-like	D8QUC4	D8QUE8	Uncharacterized protein.	Uncharacterized protein ASH2-like.	0.843
D8QUC4_SELML	D8QUV3_SELML	D8QUC4	D8QUV3	Uncharacterized protein.	Uncharacterized protein.	0.643
D8QUC4_SELML	D8R2U1_SELML	D8QUC4	D8R2U1	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.970
D8QUC4_SELML	D8R5L2_SELML	D8QUC4	D8R5L2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.977
D8QUC4_SELML	D8RF07_SELML	D8QUC4	D8RF07	Uncharacterized protein.	Uncharacterized protein.	0.552
D8QUC4_SELML	D8RKQ8_SELML	D8QUC4	D8RKQ8	Uncharacterized protein.	VEFS-Box domain-containing protein.	0.984
D8QUC4_SELML	D8SFD4_SELML	D8QUC4	D8SFD4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.977
D8QUV3_SELML	ASH2-like	D8QUV3	D8QUE8	Uncharacterized protein.	Uncharacterized protein ASH2-like.	0.843
D8QUV3_SELML	D8QUC4_SELML	D8QUV3	D8QUC4	Uncharacterized protein.	Uncharacterized protein.	0.643
D8QUV3_SELML	D8R2U1_SELML	D8QUV3	D8R2U1	Uncharacterized protein.	Histone H4; Core component of nucleosome. Nucleosomes wrap and compact DNA into chromatin, limiting DNA accessibility to the cellular machineries which require DNA as a template. Histones thereby play a central role in transcription regulation, DNA repair, DNA replication and chromosomal stability. DNA accessibility is regulated via a complex set of post-translational modifications of histones, also called histone code, and nucleosome remodeling.	0.970
D8QUV3_SELML	D8R5L2_SELML	D8QUV3	D8R5L2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.977
D8QUV3_SELML	D8RF07_SELML	D8QUV3	D8RF07	Uncharacterized protein.	Uncharacterized protein.	0.552
D8QUV3_SELML	D8RKQ8_SELML	D8QUV3	D8RKQ8	Uncharacterized protein.	VEFS-Box domain-containing protein.	0.984
D8QUV3_SELML	D8SFD4_SELML	D8QUV3	D8SFD4	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.977
D8QVG5_SELML	D8RF07_SELML	D8QVG5	D8RF07	Uncharacterized protein.	Uncharacterized protein.	0.650