D8RF71_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8RF71_SELML

Uncharacterized protein. (1194 aa)

Predicted Functional Partners:

D8S6Y9_SELML

0.997

D8SSY6_SELML

0.997

D8T7F8_SELML

0.997

D8SVC7_SELML

0.993

D8T0T6_SELML

0.993

D8QZD1_SELML

0.969

D8RWH5_SELML

0.969

D8QZD4_SELML

0.965

D8SUH0_SELML

0.961

D8SZY7_SELML

0.960

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QZD1_SELML	D8QZD4_SELML	D8QZD1	D8QZD4	Uncharacterized protein.	Myb_CC_LHEQLE domain-containing protein.	0.901
D8QZD1_SELML	D8RF71_SELML	D8QZD1	D8RF71	Uncharacterized protein.	Uncharacterized protein.	0.969
D8QZD1_SELML	D8RWH5_SELML	D8QZD1	D8RWH5	Uncharacterized protein.	Uncharacterized protein.	0.900
D8QZD1_SELML	D8S6Y9_SELML	D8QZD1	D8S6Y9	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.966
D8QZD1_SELML	D8SSY6_SELML	D8QZD1	D8SSY6	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.966
D8QZD1_SELML	D8SUH0_SELML	D8QZD1	D8SUH0	Uncharacterized protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.997
D8QZD1_SELML	D8SVC7_SELML	D8QZD1	D8SVC7	Uncharacterized protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.982
D8QZD1_SELML	D8SZY7_SELML	D8QZD1	D8SZY7	Uncharacterized protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.997
D8QZD1_SELML	D8T0T6_SELML	D8QZD1	D8T0T6	Uncharacterized protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.982
D8QZD1_SELML	D8T7F8_SELML	D8QZD1	D8T7F8	Uncharacterized protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.966
D8QZD4_SELML	D8QZD1_SELML	D8QZD4	D8QZD1	Myb_CC_LHEQLE domain-containing protein.	Uncharacterized protein.	0.901
D8QZD4_SELML	D8RF71_SELML	D8QZD4	D8RF71	Myb_CC_LHEQLE domain-containing protein.	Uncharacterized protein.	0.965
D8QZD4_SELML	D8RWH5_SELML	D8QZD4	D8RWH5	Myb_CC_LHEQLE domain-containing protein.	Uncharacterized protein.	0.901
D8QZD4_SELML	D8S6Y9_SELML	D8QZD4	D8S6Y9	Myb_CC_LHEQLE domain-containing protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.966
D8QZD4_SELML	D8SSY6_SELML	D8QZD4	D8SSY6	Myb_CC_LHEQLE domain-containing protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.966
D8QZD4_SELML	D8SUH0_SELML	D8QZD4	D8SUH0	Myb_CC_LHEQLE domain-containing protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.997
D8QZD4_SELML	D8SVC7_SELML	D8QZD4	D8SVC7	Myb_CC_LHEQLE domain-containing protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.982
D8QZD4_SELML	D8SZY7_SELML	D8QZD4	D8SZY7	Myb_CC_LHEQLE domain-containing protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.997
D8QZD4_SELML	D8T0T6_SELML	D8QZD4	D8T0T6	Myb_CC_LHEQLE domain-containing protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.982
D8QZD4_SELML	D8T7F8_SELML	D8QZD4	D8T7F8	Myb_CC_LHEQLE domain-containing protein.	Glutamine amidotransferase type-1 domain-containing protein.	0.966