D8RLU1_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8RLU1_SELML

Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle. (174 aa)

Predicted Functional Partners:

D8RBN0_SELML

0.995

D8T687_SELML

0.995

D8QVH1_SELML

0.994

D8R079_SELML

0.994

CDC23-1

0.994

D8RYU6_SELML

0.994

D8SAH1_SELML

0.994

CDC23-2

0.994

D8SV16_SELML

0.994

D8SX20_SELML

0.994

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDC23-1	CDC23-2	D8RP84	D8SLZ4	Uncharacterized protein CDC23-1.	Uncharacterized protein CDC23-2.	0.900
CDC23-1	D8QVH1_SELML	D8RP84	D8QVH1	Uncharacterized protein CDC23-1.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.991
CDC23-1	D8R079_SELML	D8RP84	D8R079	Uncharacterized protein CDC23-1.	RING-type domain-containing protein.	0.990
CDC23-1	D8RBN0_SELML	D8RP84	D8RBN0	Uncharacterized protein CDC23-1.	Uncharacterized protein.	0.994
CDC23-1	D8RLU1_SELML	D8RP84	D8RLU1	Uncharacterized protein CDC23-1.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.994
CDC23-1	D8RYU6_SELML	D8RP84	D8RYU6	Uncharacterized protein CDC23-1.	ANAPC5 domain-containing protein.	0.992
CDC23-1	D8SAH1_SELML	D8RP84	D8SAH1	Uncharacterized protein CDC23-1.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.991
CDC23-1	D8SV16_SELML	D8RP84	D8SV16	Uncharacterized protein CDC23-1.	ANAPC5 domain-containing protein.	0.992
CDC23-1	D8SX20_SELML	D8RP84	D8SX20	Uncharacterized protein CDC23-1.	APC1_C domain-containing protein.	0.991
CDC23-1	D8T687_SELML	D8RP84	D8T687	Uncharacterized protein CDC23-1.	TPR_REGION domain-containing protein.	0.995
CDC23-2	CDC23-1	D8SLZ4	D8RP84	Uncharacterized protein CDC23-2.	Uncharacterized protein CDC23-1.	0.900
CDC23-2	D8QVH1_SELML	D8SLZ4	D8QVH1	Uncharacterized protein CDC23-2.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.991
CDC23-2	D8R079_SELML	D8SLZ4	D8R079	Uncharacterized protein CDC23-2.	RING-type domain-containing protein.	0.990
CDC23-2	D8RBN0_SELML	D8SLZ4	D8RBN0	Uncharacterized protein CDC23-2.	Uncharacterized protein.	0.994
CDC23-2	D8RLU1_SELML	D8SLZ4	D8RLU1	Uncharacterized protein CDC23-2.	Anaphase-promoting complex subunit 10; Component of the anaphase promoting complex/cyclosome (APC/C), a cell cycle-regulated E3 ubiquitin-protein ligase complex that controls progression through mitosis and the G1 phase of the cell cycle.	0.994
CDC23-2	D8RYU6_SELML	D8SLZ4	D8RYU6	Uncharacterized protein CDC23-2.	ANAPC5 domain-containing protein.	0.992
CDC23-2	D8SAH1_SELML	D8SLZ4	D8SAH1	Uncharacterized protein CDC23-2.	CULLIN_2 domain-containing protein; Belongs to the cullin family.	0.991
CDC23-2	D8SV16_SELML	D8SLZ4	D8SV16	Uncharacterized protein CDC23-2.	ANAPC5 domain-containing protein.	0.992
CDC23-2	D8SX20_SELML	D8SLZ4	D8SX20	Uncharacterized protein CDC23-2.	APC1_C domain-containing protein.	0.991
CDC23-2	D8T687_SELML	D8SLZ4	D8T687	Uncharacterized protein CDC23-2.	TPR_REGION domain-containing protein.	0.995

page 1 of 6

Server load: low (22%) [HD]

Permalink

Network

Cooccurrence

Experiments

Coexpression

Databases

Neighborhood

Textmining

Fusion

© STRING Consortium 2024

Credits

Access

Info

About