D8RMU1_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8RMU1_SELML

Hydrolase_4 domain-containing protein. (337 aa)

Predicted Functional Partners:

D8SHA8_SELML

0.918

D8TCL6_SELML

0.918

D8SN88_SELML

0.902

D8SRA7_SELML

0.902

D8RHR1_SELML

0.900

D8S4X2_SELML

0.900

D8RQG6_SELML

0.761

D8RAM5_SELML

0.758

D8RH13_SELML

0.758

D8RVL7_SELML

0.744

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8RAM5_SELML	D8RH13_SELML	D8RAM5	D8RH13	Uncharacterized protein.	Uncharacterized protein.	0.900
D8RAM5_SELML	D8RMU1_SELML	D8RAM5	D8RMU1	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.758
D8RAM5_SELML	D8RQG6_SELML	D8RAM5	D8RQG6	Uncharacterized protein.	Uncharacterized protein.	0.999
D8RAM5_SELML	D8RVL7_SELML	D8RAM5	D8RVL7	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.997
D8RH13_SELML	D8RAM5_SELML	D8RH13	D8RAM5	Uncharacterized protein.	Uncharacterized protein.	0.900
D8RH13_SELML	D8RMU1_SELML	D8RH13	D8RMU1	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.758
D8RH13_SELML	D8RQG6_SELML	D8RH13	D8RQG6	Uncharacterized protein.	Uncharacterized protein.	0.999
D8RH13_SELML	D8RVL7_SELML	D8RH13	D8RVL7	Uncharacterized protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.997
D8RHR1_SELML	D8RMU1_SELML	D8RHR1	D8RMU1	Uncharacterized protein.	Hydrolase_4 domain-containing protein.	0.900
D8RHR1_SELML	D8S4X2_SELML	D8RHR1	D8S4X2	Uncharacterized protein.	Uncharacterized protein.	0.900
D8RHR1_SELML	D8SN88_SELML	D8RHR1	D8SN88	Uncharacterized protein.	Uncharacterized protein.	0.912
D8RHR1_SELML	D8SRA7_SELML	D8RHR1	D8SRA7	Uncharacterized protein.	Uncharacterized protein.	0.912
D8RMU1_SELML	D8RAM5_SELML	D8RMU1	D8RAM5	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.758
D8RMU1_SELML	D8RH13_SELML	D8RMU1	D8RH13	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.758
D8RMU1_SELML	D8RHR1_SELML	D8RMU1	D8RHR1	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.900
D8RMU1_SELML	D8RQG6_SELML	D8RMU1	D8RQG6	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.761
D8RMU1_SELML	D8RVL7_SELML	D8RMU1	D8RVL7	Hydrolase_4 domain-containing protein.	NADH dehydrogenase [ubiquinone] flavoprotein 1, mitochondrial; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain.	0.744
D8RMU1_SELML	D8S4X2_SELML	D8RMU1	D8S4X2	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.900
D8RMU1_SELML	D8SHA8_SELML	D8RMU1	D8SHA8	Hydrolase_4 domain-containing protein.	PNPLA domain-containing protein.	0.918
D8RMU1_SELML	D8SN88_SELML	D8RMU1	D8SN88	Hydrolase_4 domain-containing protein.	Uncharacterized protein.	0.902