D8RNK4_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8RNK4_SELML

Protein kinase domain-containing protein; Belongs to the protein kinase superfamily. (315 aa)

Predicted Functional Partners:

CDKB1A-2

0.771

D8QQQ3_SELML

0.770

D8R877_SELML

0.770

CDKB1A-1

0.770

D8QY47_SELML

0.683

D8RUV6_SELML

0.683

D8QUA3_SELML

0.646

D8RG31_SELML

0.646

D8S3M3_SELML

0.646

D8SQ57_SELML

0.646

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDKB1A-1	D8RNK4_SELML	D8S7I5	D8RNK4	Uncharacterized protein CDKB1A-1; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.770
CDKB1A-2	D8RNK4_SELML	D8T9S2	D8RNK4	Uncharacterized protein CDKB1A-2; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.771
D8QQQ3_SELML	D8QY47_SELML	D8QQQ3	D8QY47	Uncharacterized protein.	Uncharacterized protein.	0.999
D8QQQ3_SELML	D8R877_SELML	D8QQQ3	D8R877	Uncharacterized protein.	Uncharacterized protein.	0.544
D8QQQ3_SELML	D8RNK4_SELML	D8QQQ3	D8RNK4	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.770
D8QQQ3_SELML	D8RUV6_SELML	D8QQQ3	D8RUV6	Uncharacterized protein.	Uncharacterized protein.	0.999
D8QUA3_SELML	D8RNK4_SELML	D8QUA3	D8RNK4	Histone H3; Belongs to the histone H3 family.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.646
D8QY47_SELML	D8QQQ3_SELML	D8QY47	D8QQQ3	Uncharacterized protein.	Uncharacterized protein.	0.999
D8QY47_SELML	D8R877_SELML	D8QY47	D8R877	Uncharacterized protein.	Uncharacterized protein.	0.999
D8QY47_SELML	D8RNK4_SELML	D8QY47	D8RNK4	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.683
D8QY47_SELML	D8RUV6_SELML	D8QY47	D8RUV6	Uncharacterized protein.	Uncharacterized protein.	0.543
D8R877_SELML	D8QQQ3_SELML	D8R877	D8QQQ3	Uncharacterized protein.	Uncharacterized protein.	0.544
D8R877_SELML	D8QY47_SELML	D8R877	D8QY47	Uncharacterized protein.	Uncharacterized protein.	0.999
D8R877_SELML	D8RNK4_SELML	D8R877	D8RNK4	Uncharacterized protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.770
D8R877_SELML	D8RUV6_SELML	D8R877	D8RUV6	Uncharacterized protein.	Uncharacterized protein.	0.999
D8RG31_SELML	D8RNK4_SELML	D8RG31	D8RNK4	Histone domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.646
D8RNK4_SELML	CDKB1A-1	D8RNK4	D8S7I5	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein CDKB1A-1; Belongs to the protein kinase superfamily.	0.770
D8RNK4_SELML	CDKB1A-2	D8RNK4	D8T9S2	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein CDKB1A-2; Belongs to the protein kinase superfamily.	0.771
D8RNK4_SELML	D8QQQ3_SELML	D8RNK4	D8QQQ3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein.	0.770
D8RNK4_SELML	D8QUA3_SELML	D8RNK4	D8QUA3	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Histone H3; Belongs to the histone H3 family.	0.646