D8RWH5_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8RWH5_SELML

Uncharacterized protein. (429 aa)

Predicted Functional Partners:

D8RTQ6_SELML

0.999

D8T5F5_SELML

0.999

D8SUH0_SELML

0.997

D8SZY7_SELML

0.997

D8SVC7_SELML

0.982

D8T0T6_SELML

0.982

D8RF71_SELML

0.969

D8SDC5_SELML

0.969

D8R107_SELML

0.968

D8RF79_SELML

0.968

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8R107_SELML	D8RF71_SELML	D8R107	D8RF71	M20_dimer domain-containing protein.	Uncharacterized protein.	0.432
D8R107_SELML	D8RF79_SELML	D8R107	D8RF79	M20_dimer domain-containing protein.	M20_dimer domain-containing protein.	0.901
D8R107_SELML	D8RTQ6_SELML	D8R107	D8RTQ6	M20_dimer domain-containing protein.	Uncharacterized protein.	0.488
D8R107_SELML	D8RWH5_SELML	D8R107	D8RWH5	M20_dimer domain-containing protein.	Uncharacterized protein.	0.968
D8R107_SELML	D8SDC5_SELML	D8R107	D8SDC5	M20_dimer domain-containing protein.	Uncharacterized protein.	0.432
D8R107_SELML	D8SUH0_SELML	D8R107	D8SUH0	M20_dimer domain-containing protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.966
D8R107_SELML	D8SVC7_SELML	D8R107	D8SVC7	M20_dimer domain-containing protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.432
D8R107_SELML	D8SZY7_SELML	D8R107	D8SZY7	M20_dimer domain-containing protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.966
D8R107_SELML	D8T0T6_SELML	D8R107	D8T0T6	M20_dimer domain-containing protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.432
D8R107_SELML	D8T5F5_SELML	D8R107	D8T5F5	M20_dimer domain-containing protein.	Uncharacterized protein.	0.488
D8RF71_SELML	D8R107_SELML	D8RF71	D8R107	Uncharacterized protein.	M20_dimer domain-containing protein.	0.432
D8RF71_SELML	D8RF79_SELML	D8RF71	D8RF79	Uncharacterized protein.	M20_dimer domain-containing protein.	0.432
D8RF71_SELML	D8RTQ6_SELML	D8RF71	D8RTQ6	Uncharacterized protein.	Uncharacterized protein.	0.746
D8RF71_SELML	D8RWH5_SELML	D8RF71	D8RWH5	Uncharacterized protein.	Uncharacterized protein.	0.969
D8RF71_SELML	D8SDC5_SELML	D8RF71	D8SDC5	Uncharacterized protein.	Uncharacterized protein.	0.900
D8RF71_SELML	D8SUH0_SELML	D8RF71	D8SUH0	Uncharacterized protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.961
D8RF71_SELML	D8SVC7_SELML	D8RF71	D8SVC7	Uncharacterized protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.993
D8RF71_SELML	D8SZY7_SELML	D8RF71	D8SZY7	Uncharacterized protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.960
D8RF71_SELML	D8T0T6_SELML	D8RF71	D8T0T6	Uncharacterized protein.	Uncharacterized protein; Belongs to the aspartate/ornithine carbamoyltransferase superfamily.	0.993
D8RF71_SELML	D8T5F5_SELML	D8RF71	D8T5F5	Uncharacterized protein.	Uncharacterized protein.	0.746