D8S001_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8S001_SELML

Protein kinase domain-containing protein. (208 aa)

Predicted Functional Partners:

D8QMJ5_SELML

0.965

D8R7N6_SELML

0.965

D8S5T6_SELML

0.893

D8SMV0_SELML

0.893

D8T4Z8_SELML

0.869

GSK1-1

0.825

GSK2-1

0.825

D8SFJ6_SELML

0.790

D8TFI0_SELML

0.790

D8R682_SELML

0.776

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QMJ5_SELML	D8S001_SELML	D8QMJ5	D8S001	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.965
D8QMJ5_SELML	D8S5T6_SELML	D8QMJ5	D8S5T6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.817
D8QMJ5_SELML	D8SMV0_SELML	D8QMJ5	D8SMV0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.817
D8QMJ5_SELML	D8T4Z8_SELML	D8QMJ5	D8T4Z8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.613
D8R682_SELML	D8S001_SELML	D8R682	D8S001	Serine/threonine-protein phosphatase.	Protein kinase domain-containing protein.	0.776
D8R682_SELML	GSK1-1	D8R682	D8SX29	Serine/threonine-protein phosphatase.	GSK3/shaggy-like protein kinase; Belongs to the protein kinase superfamily.	0.675
D8R682_SELML	GSK2-1	D8R682	D8T679	Serine/threonine-protein phosphatase.	Uncharacterized protein GSK2-1; Belongs to the protein kinase superfamily.	0.675
D8R7N6_SELML	D8S001_SELML	D8R7N6	D8S001	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.965
D8R7N6_SELML	D8S5T6_SELML	D8R7N6	D8S5T6	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.817
D8R7N6_SELML	D8SMV0_SELML	D8R7N6	D8SMV0	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.817
D8R7N6_SELML	D8T4Z8_SELML	D8R7N6	D8T4Z8	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	Protein kinase domain-containing protein.	0.613
D8S001_SELML	D8QMJ5_SELML	D8S001	D8QMJ5	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.965
D8S001_SELML	D8R682_SELML	D8S001	D8R682	Protein kinase domain-containing protein.	Serine/threonine-protein phosphatase.	0.776
D8S001_SELML	D8R7N6_SELML	D8S001	D8R7N6	Protein kinase domain-containing protein.	Protein kinase domain-containing protein; Belongs to the protein kinase superfamily.	0.965
D8S001_SELML	D8S5T6_SELML	D8S001	D8S5T6	Protein kinase domain-containing protein.	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	0.893
D8S001_SELML	D8SFJ6_SELML	D8S001	D8SFJ6	Protein kinase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.790
D8S001_SELML	D8SMV0_SELML	D8S001	D8SMV0	Protein kinase domain-containing protein.	PI3K/PI4K domain-containing protein; Belongs to the PI3/PI4-kinase family.	0.893
D8S001_SELML	D8T4Z8_SELML	D8S001	D8T4Z8	Protein kinase domain-containing protein.	Protein kinase domain-containing protein.	0.869
D8S001_SELML	D8TFI0_SELML	D8S001	D8TFI0	Protein kinase domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.790
D8S001_SELML	GSK1-1	D8S001	D8SX29	Protein kinase domain-containing protein.	GSK3/shaggy-like protein kinase; Belongs to the protein kinase superfamily.	0.825