D8S3A4_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8S3A4_SELML

PseudoU_synth_2 domain-containing protein. (191 aa)

Predicted Functional Partners:

D8REE6_SELML

0.748

D8S6Z8_SELML

0.706

D8R5Y8_SELML

0.684

D8RVL1_SELML

0.668

D8S2B1_SELML

0.668

D8QST4_SELML

0.595

D8RD40_SELML

0.595

D8QT02_SELML

0.559

D8R276_SELML

0.559

D8R6B6_SELML

0.528

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QST4_SELML	D8QT02_SELML	D8QST4	D8QT02	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	SpoU_methylase domain-containing protein.	0.883
D8QST4_SELML	D8R276_SELML	D8QST4	D8R276	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	SpoU_methylase domain-containing protein.	0.883
D8QST4_SELML	D8R5Y8_SELML	D8QST4	D8R5Y8	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	L51_S25_CI-B8 domain-containing protein.	0.941
D8QST4_SELML	D8R6B6_SELML	D8QST4	D8R6B6	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.989
D8QST4_SELML	D8RD40_SELML	D8QST4	D8RD40	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.907
D8QST4_SELML	D8REE6_SELML	D8QST4	D8REE6	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.997
D8QST4_SELML	D8RVL1_SELML	D8QST4	D8RVL1	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.886
D8QST4_SELML	D8S2B1_SELML	D8QST4	D8S2B1	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	Uncharacterized protein.	0.886
D8QST4_SELML	D8S3A4_SELML	D8QST4	D8S3A4	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	PseudoU_synth_2 domain-containing protein.	0.595
D8QST4_SELML	D8S6Z8_SELML	D8QST4	D8S6Z8	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	G domain-containing protein.	0.898
D8QT02_SELML	D8QST4_SELML	D8QT02	D8QST4	SpoU_methylase domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.883
D8QT02_SELML	D8R5Y8_SELML	D8QT02	D8R5Y8	SpoU_methylase domain-containing protein.	L51_S25_CI-B8 domain-containing protein.	0.897
D8QT02_SELML	D8R6B6_SELML	D8QT02	D8R6B6	SpoU_methylase domain-containing protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.878
D8QT02_SELML	D8RD40_SELML	D8QT02	D8RD40	SpoU_methylase domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.883
D8QT02_SELML	D8REE6_SELML	D8QT02	D8REE6	SpoU_methylase domain-containing protein.	Uncharacterized protein.	0.905
D8QT02_SELML	D8RVL1_SELML	D8QT02	D8RVL1	SpoU_methylase domain-containing protein.	Uncharacterized protein.	0.927
D8QT02_SELML	D8S2B1_SELML	D8QT02	D8S2B1	SpoU_methylase domain-containing protein.	Uncharacterized protein.	0.927
D8QT02_SELML	D8S3A4_SELML	D8QT02	D8S3A4	SpoU_methylase domain-containing protein.	PseudoU_synth_2 domain-containing protein.	0.559
D8QT02_SELML	D8S6Z8_SELML	D8QT02	D8S6Z8	SpoU_methylase domain-containing protein.	G domain-containing protein.	0.929
D8R276_SELML	D8QST4_SELML	D8R276	D8QST4	SpoU_methylase domain-containing protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.883