D8S3W8_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8S3W8_SELML

FKS1_dom1 domain-containing protein. (1744 aa)

Predicted Functional Partners:

D8RS41_SELML

0.551

D8SJF8_SELML

0.551

D8QNJ2_SELML

0.540

D8RDS2_SELML

0.540

D8QQC1_SELML

0.539

D8R8L7_SELML

0.539

D8R6H7_SELML

0.537

D8S4H4_SELML

0.537

D8QNW8_SELML

0.536

D8SJ52_SELML

0.536

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QNJ2_SELML	D8QNW8_SELML	D8QNJ2	D8QNW8	Uncharacterized protein.	Uncharacterized protein.	0.551
D8QNJ2_SELML	D8QQC1_SELML	D8QNJ2	D8QQC1	Uncharacterized protein.	RIC1 domain-containing protein.	0.562
D8QNJ2_SELML	D8R6H7_SELML	D8QNJ2	D8R6H7	Uncharacterized protein.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.557
D8QNJ2_SELML	D8R8L7_SELML	D8QNJ2	D8R8L7	Uncharacterized protein.	RIC1 domain-containing protein.	0.562
D8QNJ2_SELML	D8RS41_SELML	D8QNJ2	D8RS41	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.570
D8QNJ2_SELML	D8S3W8_SELML	D8QNJ2	D8S3W8	Uncharacterized protein.	FKS1_dom1 domain-containing protein.	0.540
D8QNJ2_SELML	D8S4H4_SELML	D8QNJ2	D8S4H4	Uncharacterized protein.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.557
D8QNJ2_SELML	D8SJ52_SELML	D8QNJ2	D8SJ52	Uncharacterized protein.	Uncharacterized protein.	0.551
D8QNJ2_SELML	D8SJF8_SELML	D8QNJ2	D8SJF8	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.570
D8QNW8_SELML	D8QNJ2_SELML	D8QNW8	D8QNJ2	Uncharacterized protein.	Uncharacterized protein.	0.551
D8QNW8_SELML	D8QQC1_SELML	D8QNW8	D8QQC1	Uncharacterized protein.	RIC1 domain-containing protein.	0.536
D8QNW8_SELML	D8R6H7_SELML	D8QNW8	D8R6H7	Uncharacterized protein.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.569
D8QNW8_SELML	D8R8L7_SELML	D8QNW8	D8R8L7	Uncharacterized protein.	RIC1 domain-containing protein.	0.536
D8QNW8_SELML	D8RDS2_SELML	D8QNW8	D8RDS2	Uncharacterized protein.	Uncharacterized protein.	0.551
D8QNW8_SELML	D8RS41_SELML	D8QNW8	D8RS41	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.567
D8QNW8_SELML	D8S3W8_SELML	D8QNW8	D8S3W8	Uncharacterized protein.	FKS1_dom1 domain-containing protein.	0.536
D8QNW8_SELML	D8S4H4_SELML	D8QNW8	D8S4H4	Uncharacterized protein.	L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.	0.569
D8QNW8_SELML	D8SJ52_SELML	D8QNW8	D8SJ52	Uncharacterized protein.	Uncharacterized protein.	0.900
D8QNW8_SELML	D8SJF8_SELML	D8QNW8	D8SJF8	Uncharacterized protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.567
D8QQC1_SELML	D8QNJ2_SELML	D8QQC1	D8QNJ2	RIC1 domain-containing protein.	Uncharacterized protein.	0.562