D8S5V2_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8S5V2_SELML

USP domain-containing protein. (245 aa)

Predicted Functional Partners:

D8QRC6_SELML

0.959

D8QZ58_SELML

0.959

D8R6K7_SELML

0.825

D8S4D5_SELML

0.825

D8S8X5_SELML

0.664

UPL5-2

0.662

UPL5-1

0.662

D8S0X2_SELML

0.650

D8SBJ8_SELML

0.650

D8RIM5_SELML

0.536

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QRC6_SELML	D8S5V2_SELML	D8QRC6	D8S5V2	NTF2 domain-containing protein.	USP domain-containing protein.	0.959
D8QZ58_SELML	D8S5V2_SELML	D8QZ58	D8S5V2	NTF2 domain-containing protein.	USP domain-containing protein.	0.959
D8R6K7_SELML	D8RIM5_SELML	D8R6K7	D8RIM5	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Uncharacterized protein.	0.715
D8R6K7_SELML	D8S5V2_SELML	D8R6K7	D8S5V2	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	USP domain-containing protein.	0.825
D8R6K7_SELML	D8S8X5_SELML	D8R6K7	D8S8X5	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Ribosomal_S27 domain-containing protein.	0.974
D8R6K7_SELML	UPL5-1	D8R6K7	D8SHX3	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Ubiquitin-protein ligase, UPL5.	0.739
D8R6K7_SELML	UPL5-2	D8R6K7	D8SEY7	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Ubiquitin-protein ligase, UPL5.	0.739
D8RIM5_SELML	D8R6K7_SELML	D8RIM5	D8R6K7	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.715
D8RIM5_SELML	D8S4D5_SELML	D8RIM5	D8S4D5	Uncharacterized protein.	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	0.715
D8RIM5_SELML	D8S5V2_SELML	D8RIM5	D8S5V2	Uncharacterized protein.	USP domain-containing protein.	0.536
D8S0X2_SELML	D8S5V2_SELML	D8S0X2	D8S5V2	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	USP domain-containing protein.	0.650
D8S0X2_SELML	D8S8X5_SELML	D8S0X2	D8S8X5	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Ribosomal_S27 domain-containing protein.	0.973
D8S0X2_SELML	D8SBJ8_SELML	D8S0X2	D8SBJ8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.900
D8S4D5_SELML	D8RIM5_SELML	D8S4D5	D8RIM5	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Uncharacterized protein.	0.715
D8S4D5_SELML	D8S5V2_SELML	D8S4D5	D8S5V2	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	USP domain-containing protein.	0.825
D8S4D5_SELML	D8S8X5_SELML	D8S4D5	D8S8X5	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Ribosomal_S27 domain-containing protein.	0.974
D8S4D5_SELML	UPL5-1	D8S4D5	D8SHX3	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Ubiquitin-protein ligase, UPL5.	0.739
D8S4D5_SELML	UPL5-2	D8S4D5	D8SEY7	Ubiquitin carboxyl-terminal hydrolase; Recognizes and hydrolyzes the peptide bond at the C-terminal Gly of ubiquitin. Involved in the processing of poly-ubiquitin precursors as well as that of ubiquitinated proteins. Belongs to the peptidase C19 family.	Ubiquitin-protein ligase, UPL5.	0.739
D8S5V2_SELML	D8QRC6_SELML	D8S5V2	D8QRC6	USP domain-containing protein.	NTF2 domain-containing protein.	0.959
D8S5V2_SELML	D8QZ58_SELML	D8S5V2	D8QZ58	USP domain-containing protein.	NTF2 domain-containing protein.	0.959