STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D8SDB1_SELMLUncharacterized protein. (766 aa)    
Predicted Functional Partners:
D8RBB1_SELML
Matrin-type domain-containing protein.
   
 0.993
D8RYC0_SELML
Matrin-type domain-containing protein.
   
 0.993
D8SK46_SELML
Matrin-type domain-containing protein.
   
 0.988
D8T4H2_SELML
Matrin-type domain-containing protein.
   
 0.988
D8SHK2_SELML
Splicing factor subunit; Belongs to the SF3B5 family.
    
 0.973
D8S5W4_SELML
Uncharacterized protein.
   
 0.970
D8QR66_SELML
Sm domain-containing protein.
   
 0.964
D8R512_SELML
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.963
D8RDL9_SELML
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
    
 0.960
D8RA33_SELML
Small nuclear ribonucleoprotein G.
   
  0.951
Your Current Organism:
Selaginella moellendorffii
NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.