D8SUQ0_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8SUQ0_SELML

Peptidylprolyl isomerase. (165 aa)

Predicted Functional Partners:

D8R090_SELML

0.534

D8RQF0_SELML

0.463

D8RVG4_SELML

0.460

D8S265_SELML

0.460

D8SNZ4_SELML

0.459

D8RFJ4_SELML

0.440

D8QSI5_SELML

0.427

D8QXU2_SELML

0.427

D8RUK8_SELML

0.427

SCE1a

0.403

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QSI5_SELML	D8R090_SELML	D8QSI5	D8R090	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Peptidylprolyl isomerase.	0.427
D8QSI5_SELML	D8SNZ4_SELML	D8QSI5	D8SNZ4	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Peptidylprolyl isomerase.	0.427
D8QSI5_SELML	D8SUQ0_SELML	D8QSI5	D8SUQ0	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Peptidylprolyl isomerase.	0.427
D8QSI5_SELML	SCE1a	D8QSI5	D8SBS3	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	SUMO-conjugating enzyme 1a; Belongs to the ubiquitin-conjugating enzyme family.	0.588
D8QXU2_SELML	D8R090_SELML	D8QXU2	D8R090	S1-like domain-containing protein.	Peptidylprolyl isomerase.	0.427
D8QXU2_SELML	D8SNZ4_SELML	D8QXU2	D8SNZ4	S1-like domain-containing protein.	Peptidylprolyl isomerase.	0.427
D8QXU2_SELML	D8SUQ0_SELML	D8QXU2	D8SUQ0	S1-like domain-containing protein.	Peptidylprolyl isomerase.	0.427
D8R090_SELML	D8QSI5_SELML	D8R090	D8QSI5	Peptidylprolyl isomerase.	S1-like domain-containing protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.427
D8R090_SELML	D8QXU2_SELML	D8R090	D8QXU2	Peptidylprolyl isomerase.	S1-like domain-containing protein.	0.427
D8R090_SELML	D8RQF0_SELML	D8R090	D8RQF0	Peptidylprolyl isomerase.	PPIase cyclophilin-type domain-containing protein.	0.589
D8R090_SELML	D8RUK8_SELML	D8R090	D8RUK8	Peptidylprolyl isomerase.	S1-like domain-containing protein.	0.427
D8R090_SELML	D8SUQ0_SELML	D8R090	D8SUQ0	Peptidylprolyl isomerase.	Peptidylprolyl isomerase.	0.534
D8RFJ4_SELML	D8SUQ0_SELML	D8RFJ4	D8SUQ0	Uncharacterized protein.	Peptidylprolyl isomerase.	0.440
D8RQF0_SELML	D8R090_SELML	D8RQF0	D8R090	PPIase cyclophilin-type domain-containing protein.	Peptidylprolyl isomerase.	0.589
D8RQF0_SELML	D8SNZ4_SELML	D8RQF0	D8SNZ4	PPIase cyclophilin-type domain-containing protein.	Peptidylprolyl isomerase.	0.410
D8RQF0_SELML	D8SUQ0_SELML	D8RQF0	D8SUQ0	PPIase cyclophilin-type domain-containing protein.	Peptidylprolyl isomerase.	0.463
D8RUK8_SELML	D8R090_SELML	D8RUK8	D8R090	S1-like domain-containing protein.	Peptidylprolyl isomerase.	0.427
D8RUK8_SELML	D8SNZ4_SELML	D8RUK8	D8SNZ4	S1-like domain-containing protein.	Peptidylprolyl isomerase.	0.427
D8RUK8_SELML	D8SUQ0_SELML	D8RUK8	D8SUQ0	S1-like domain-containing protein.	Peptidylprolyl isomerase.	0.427
D8RVG4_SELML	D8S265_SELML	D8RVG4	D8S265	Uncharacterized protein.	Uncharacterized protein.	0.960