Rab11;A1a-1 protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

Rab11;A1a-1

Rab family GTPase. (216 aa)

Predicted Functional Partners:

D8QPT4_SELML

0.886

ZWI-1

0.791

ZWI-2

0.791

D8RMV0_SELML

0.782

D8TAD9_SELML

0.782

D8SNB6_SELML

0.737

D8SNB7_SELML

0.737

D8SRD7_SELML

0.737

D8SRD8_SELML

0.737

D8SVI5_SELML

0.733

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QPT4_SELML	Rab11;A1a-1	D8QPT4	D8SVZ0	Uncharacterized protein.	Rab family GTPase.	0.886
D8RMV0_SELML	Rab11;A1a-1	D8RMV0	D8SVZ0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Rab family GTPase.	0.782
D8SNB6_SELML	D8SNB7_SELML	D8SNB6	D8SNB7	RING-type domain-containing protein.	Uncharacterized protein.	0.941
D8SNB6_SELML	Rab11;A1a-1	D8SNB6	D8SVZ0	RING-type domain-containing protein.	Rab family GTPase.	0.737
D8SNB6_SELML	ZWI-1	D8SNB6	D8RCP8	RING-type domain-containing protein.	Uncharacterized protein ZWI-1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.450
D8SNB6_SELML	ZWI-2	D8SNB6	D8TBB5	RING-type domain-containing protein.	Uncharacterized protein ZWI-2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.450
D8SNB7_SELML	D8SNB6_SELML	D8SNB7	D8SNB6	Uncharacterized protein.	RING-type domain-containing protein.	0.941
D8SNB7_SELML	D8SRD7_SELML	D8SNB7	D8SRD7	Uncharacterized protein.	RING-type domain-containing protein.	0.940
D8SNB7_SELML	Rab11;A1a-1	D8SNB7	D8SVZ0	Uncharacterized protein.	Rab family GTPase.	0.737
D8SNB7_SELML	ZWI-1	D8SNB7	D8RCP8	Uncharacterized protein.	Uncharacterized protein ZWI-1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.450
D8SNB7_SELML	ZWI-2	D8SNB7	D8TBB5	Uncharacterized protein.	Uncharacterized protein ZWI-2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.450
D8SRD7_SELML	D8SNB7_SELML	D8SRD7	D8SNB7	RING-type domain-containing protein.	Uncharacterized protein.	0.940
D8SRD7_SELML	Rab11;A1a-1	D8SRD7	D8SVZ0	RING-type domain-containing protein.	Rab family GTPase.	0.737
D8SRD7_SELML	ZWI-1	D8SRD7	D8RCP8	RING-type domain-containing protein.	Uncharacterized protein ZWI-1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.450
D8SRD7_SELML	ZWI-2	D8SRD7	D8TBB5	RING-type domain-containing protein.	Uncharacterized protein ZWI-2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.450
D8SRD8_SELML	Rab11;A1a-1	D8SRD8	D8SVZ0	SH3_15 domain-containing protein.	Rab family GTPase.	0.737
D8SRD8_SELML	ZWI-1	D8SRD8	D8RCP8	SH3_15 domain-containing protein.	Uncharacterized protein ZWI-1; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.450
D8SRD8_SELML	ZWI-2	D8SRD8	D8TBB5	SH3_15 domain-containing protein.	Uncharacterized protein ZWI-2; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.	0.450
D8SVI5_SELML	Rab11;A1a-1	D8SVI5	D8SVZ0	Guanosine nucleotide diphosphate dissociation inhibitor; Belongs to the Rab GDI family.	Rab family GTPase.	0.733
D8TAD9_SELML	Rab11;A1a-1	D8TAD9	D8SVZ0	Uncharacterized protein; Belongs to the PI3/PI4-kinase family.	Rab family GTPase.	0.782