D8SXB4_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8SXB4_SELML

Uncharacterized protein. (210 aa)

Predicted Functional Partners:

D8QYS2_SELML

0.949

D8T2A1_SELML

0.949

D8R9M8_SELML

0.942

D8R2N7_SELML

0.938

D8SE95_SELML

0.938

D8ST91_SELML

0.938

D8RMI1_SELML

0.937

D8SLL4_SELML

0.937

D8T6I1_SELML

0.929

D8T6P1_SELML

0.929

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QYS2_SELML	D8RMI1_SELML	D8QYS2	D8RMI1	DHO_dh domain-containing protein.	IU_nuc_hydro domain-containing protein.	0.948
D8QYS2_SELML	D8SLL4_SELML	D8QYS2	D8SLL4	DHO_dh domain-containing protein.	IU_nuc_hydro domain-containing protein.	0.948
D8QYS2_SELML	D8SXB4_SELML	D8QYS2	D8SXB4	DHO_dh domain-containing protein.	Uncharacterized protein.	0.949
D8QYS2_SELML	D8T2A1_SELML	D8QYS2	D8T2A1	DHO_dh domain-containing protein.	AA_kinase domain-containing protein.	0.474
D8QYS2_SELML	D8T6I1_SELML	D8QYS2	D8T6I1	DHO_dh domain-containing protein.	OMPdecase domain-containing protein.	0.970
D8QYS2_SELML	D8T6P1_SELML	D8QYS2	D8T6P1	DHO_dh domain-containing protein.	OMPdecase domain-containing protein.	0.970
D8R2N7_SELML	D8R9M8_SELML	D8R2N7	D8R9M8	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	Uridine kinase; Belongs to the uridine kinase family.	0.930
D8R2N7_SELML	D8SE95_SELML	D8R2N7	D8SE95	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	Uridine kinase; Belongs to the uridine kinase family.	0.930
D8R2N7_SELML	D8ST91_SELML	D8R2N7	D8ST91	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	0.900
D8R2N7_SELML	D8SXB4_SELML	D8R2N7	D8SXB4	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	Uncharacterized protein.	0.938
D8R2N7_SELML	D8T2A1_SELML	D8R2N7	D8T2A1	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	AA_kinase domain-containing protein.	0.958
D8R2N7_SELML	D8T6I1_SELML	D8R2N7	D8T6I1	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	OMPdecase domain-containing protein.	0.959
D8R2N7_SELML	D8T6P1_SELML	D8R2N7	D8T6P1	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	OMPdecase domain-containing protein.	0.959
D8R9M8_SELML	D8R2N7_SELML	D8R9M8	D8R2N7	Uridine kinase; Belongs to the uridine kinase family.	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	0.930
D8R9M8_SELML	D8RMI1_SELML	D8R9M8	D8RMI1	Uridine kinase; Belongs to the uridine kinase family.	IU_nuc_hydro domain-containing protein.	0.935
D8R9M8_SELML	D8SLL4_SELML	D8R9M8	D8SLL4	Uridine kinase; Belongs to the uridine kinase family.	IU_nuc_hydro domain-containing protein.	0.935
D8R9M8_SELML	D8ST91_SELML	D8R9M8	D8ST91	Uridine kinase; Belongs to the uridine kinase family.	UMP-CMP kinase; Catalyzes the phosphorylation of pyrimidine nucleoside monophosphates at the expense of ATP. Plays an important role in de novo pyrimidine nucleotide biosynthesis. Has preference for UMP and CMP as phosphate acceptors; Belongs to the adenylate kinase family. UMP-CMP kinase subfamily.	0.930
D8R9M8_SELML	D8SXB4_SELML	D8R9M8	D8SXB4	Uridine kinase; Belongs to the uridine kinase family.	Uncharacterized protein.	0.942
D8R9M8_SELML	D8T2A1_SELML	D8R9M8	D8T2A1	Uridine kinase; Belongs to the uridine kinase family.	AA_kinase domain-containing protein.	0.949
D8R9M8_SELML	D8T6I1_SELML	D8R9M8	D8T6I1	Uridine kinase; Belongs to the uridine kinase family.	OMPdecase domain-containing protein.	0.713