STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
D8T8D9_SELMLCPSF_A domain-containing protein. (1292 aa)    
Predicted Functional Partners:
D8SHK2_SELML
Splicing factor subunit; Belongs to the SF3B5 family.
   
 0.992
D8RTJ7_SELML
RRM domain-containing protein.
    
 0.991
D8R512_SELML
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.989
D8S5W4_SELML
Uncharacterized protein.
   
 0.988
D8RA33_SELML
Small nuclear ribonucleoprotein G.
   
 0.984
D8QR66_SELML
Sm domain-containing protein.
   
 0.982
D8RDL9_SELML
Small nuclear ribonucleoprotein Sm D1; Involved in splicing regulation. Facilitates post- transcriptional gene silencing (PTGS) by limiting the degradation of transgene aberrant RNAs by the RNA quality control (RQC) machinery, thus favoring their entry into cytoplasmic siRNA bodies where they can trigger PTGS. Does not participate in the production of small RNAs. Belongs to the snRNP core protein family.
   
 0.979
D8RPX7_SELML
Sm domain-containing protein.
   
 0.974
D8RRR0_SELML
MPN domain-containing protein.
   
 
 0.973
D8RQI0_SELML
PSP domain-containing protein.
   
 0.967
Your Current Organism:
Selaginella moellendorffii
NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii
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