D8TA32_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8TA32_SELML

Uncharacterized protein. (121 aa)

Predicted Functional Partners:

D8R4G5_SELML

0.928

D8RCH7_SELML

0.925

D8QNU5_SELML

0.855

D8SJ81_SELML

0.855

D8RE43_SELML

0.809

D8STY8_SELML

0.809

D8R5L0_SELML

0.761

D8SFD7_SELML

0.761

D8QYN3_SELML

0.746

D8R904_SELML

0.746

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QNU5_SELML	D8QYN3_SELML	D8QNU5	D8QYN3	YL1_C domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.963
D8QNU5_SELML	D8R4G5_SELML	D8QNU5	D8R4G5	YL1_C domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.991
D8QNU5_SELML	D8R5L0_SELML	D8QNU5	D8R5L0	YL1_C domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.949
D8QNU5_SELML	D8R904_SELML	D8QNU5	D8R904	YL1_C domain-containing protein.	RuvB-like helicase; Belongs to the RuvB family.	0.963
D8QNU5_SELML	D8RCH7_SELML	D8QNU5	D8RCH7	YL1_C domain-containing protein.	Uncharacterized protein.	0.930
D8QNU5_SELML	D8RE43_SELML	D8QNU5	D8RE43	YL1_C domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.986
D8QNU5_SELML	D8SFD7_SELML	D8QNU5	D8SFD7	YL1_C domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.949
D8QNU5_SELML	D8STY8_SELML	D8QNU5	D8STY8	YL1_C domain-containing protein.	Uncharacterized protein; Belongs to the actin family.	0.983
D8QNU5_SELML	D8TA32_SELML	D8QNU5	D8TA32	YL1_C domain-containing protein.	Uncharacterized protein.	0.855
D8QYN3_SELML	D8QNU5_SELML	D8QYN3	D8QNU5	RuvB-like helicase; Belongs to the RuvB family.	YL1_C domain-containing protein.	0.963
D8QYN3_SELML	D8R4G5_SELML	D8QYN3	D8R4G5	RuvB-like helicase; Belongs to the RuvB family.	RuvB-like helicase; Belongs to the RuvB family.	0.999
D8QYN3_SELML	D8R5L0_SELML	D8QYN3	D8R5L0	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein; Belongs to the actin family.	0.985
D8QYN3_SELML	D8R904_SELML	D8QYN3	D8R904	RuvB-like helicase; Belongs to the RuvB family.	RuvB-like helicase; Belongs to the RuvB family.	0.543
D8QYN3_SELML	D8RCH7_SELML	D8QYN3	D8RCH7	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.620
D8QYN3_SELML	D8RE43_SELML	D8QYN3	D8RE43	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein; Belongs to the actin family.	0.965
D8QYN3_SELML	D8SFD7_SELML	D8QYN3	D8SFD7	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein; Belongs to the actin family.	0.985
D8QYN3_SELML	D8SJ81_SELML	D8QYN3	D8SJ81	RuvB-like helicase; Belongs to the RuvB family.	YL1_C domain-containing protein.	0.963
D8QYN3_SELML	D8STY8_SELML	D8QYN3	D8STY8	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein; Belongs to the actin family.	0.965
D8QYN3_SELML	D8TA32_SELML	D8QYN3	D8TA32	RuvB-like helicase; Belongs to the RuvB family.	Uncharacterized protein.	0.746
D8R4G5_SELML	D8QNU5_SELML	D8R4G5	D8QNU5	RuvB-like helicase; Belongs to the RuvB family.	YL1_C domain-containing protein.	0.991