D8TDV2_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8TDV2_SELML

Protein BCCIP homolog; Belongs to the BCP1 family. (276 aa)

Predicted Functional Partners:

D8QP31_SELML

0.819

D8SIZ5_SELML

0.819

D8R2K0_SELML

0.805

D8ST48_SELML

0.805

D8RE37_SELML

0.795

D8STZ4_SELML

0.795

D8RZE5_SELML

0.791

D8TEM9_SELML

0.791

D8QR22_SELML

0.780

D8R7W3_SELML

0.780

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QP31_SELML	D8QR22_SELML	D8QP31	D8QR22	Brix domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.993
D8QP31_SELML	D8R2K0_SELML	D8QP31	D8R2K0	Brix domain-containing protein.	Brix domain-containing protein.	0.987
D8QP31_SELML	D8R7W3_SELML	D8QP31	D8R7W3	Brix domain-containing protein.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.993
D8QP31_SELML	D8RE37_SELML	D8QP31	D8RE37	Brix domain-containing protein.	RRM domain-containing protein.	0.994
D8QP31_SELML	D8RZE5_SELML	D8QP31	D8RZE5	Brix domain-containing protein.	Uncharacterized protein.	0.994
D8QP31_SELML	D8ST48_SELML	D8QP31	D8ST48	Brix domain-containing protein.	Brix domain-containing protein.	0.987
D8QP31_SELML	D8STZ4_SELML	D8QP31	D8STZ4	Brix domain-containing protein.	RRM domain-containing protein.	0.994
D8QP31_SELML	D8TDV2_SELML	D8QP31	D8TDV2	Brix domain-containing protein.	Protein BCCIP homolog; Belongs to the BCP1 family.	0.819
D8QP31_SELML	D8TEM9_SELML	D8QP31	D8TEM9	Brix domain-containing protein.	Uncharacterized protein.	0.994
D8QR22_SELML	D8QP31_SELML	D8QR22	D8QP31	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Brix domain-containing protein.	0.993
D8QR22_SELML	D8R2K0_SELML	D8QR22	D8R2K0	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Brix domain-containing protein.	0.988
D8QR22_SELML	D8R7W3_SELML	D8QR22	D8R7W3	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	0.543
D8QR22_SELML	D8RE37_SELML	D8QR22	D8RE37	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	RRM domain-containing protein.	0.991
D8QR22_SELML	D8RZE5_SELML	D8QR22	D8RZE5	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized protein.	0.995
D8QR22_SELML	D8SIZ5_SELML	D8QR22	D8SIZ5	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Brix domain-containing protein.	0.993
D8QR22_SELML	D8ST48_SELML	D8QR22	D8ST48	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Brix domain-containing protein.	0.988
D8QR22_SELML	D8STZ4_SELML	D8QR22	D8STZ4	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	RRM domain-containing protein.	0.991
D8QR22_SELML	D8TDV2_SELML	D8QR22	D8TDV2	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Protein BCCIP homolog; Belongs to the BCP1 family.	0.780
D8QR22_SELML	D8TEM9_SELML	D8QR22	D8TEM9	Ribosome assembly factor mrt4; Component of the ribosome assembly machinery. Nuclear paralog of the ribosomal protein P0, it binds pre-60S subunits at an early stage of assembly in the nucleolus, and is replaced by P0 in cytoplasmic pre-60S subunits and mature 80S ribosomes.	Uncharacterized protein.	0.995
D8R2K0_SELML	D8QP31_SELML	D8R2K0	D8QP31	Brix domain-containing protein.	Brix domain-containing protein.	0.987