D8TE63_SELML protein (Selaginella moellendorffii)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

D8TE63_SELML

Uncharacterized protein. (176 aa)

Predicted Functional Partners:

psaC

0.962

psaB

0.938

psaA

0.937

D8TE62_SELML

0.937

ndhD

0.924

D8TE48_SELML

0.924

D8QPQ3_SELML

0.898

D8S8J0_SELML

0.898

D8SKS2_SELML

0.897

petD

0.847

Your Current Organism:

Selaginella moellendorffii

NCBI taxonomy Id: 88036
Other names: S. moellendorffii, Selaginella moellendorffii Hieron., Selaginella moellendorfii

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D8QPQ3_SELML	D8S8J0_SELML	D8QPQ3	D8S8J0	Uncharacterized protein.	Uncharacterized protein.	0.999
D8QPQ3_SELML	D8SKS2_SELML	D8QPQ3	D8SKS2	Uncharacterized protein.	Uncharacterized protein.	0.900
D8QPQ3_SELML	D8TE48_SELML	D8QPQ3	D8TE48	Uncharacterized protein.	NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.918
D8QPQ3_SELML	D8TE62_SELML	D8QPQ3	D8TE62	Uncharacterized protein.	Uncharacterized protein.	0.955
D8QPQ3_SELML	D8TE63_SELML	D8QPQ3	D8TE63	Uncharacterized protein.	Uncharacterized protein.	0.898
D8QPQ3_SELML	ndhD	D8QPQ3	C7B2J2	Uncharacterized protein.	NADH dehydrogenase subunit 4.	0.918
D8QPQ3_SELML	petD	D8QPQ3	C7B2H7	Uncharacterized protein.	Cytochrome b6/f complex subunit IV.	0.785
D8QPQ3_SELML	psaA	D8QPQ3	C7B2K6	Uncharacterized protein.	Photosystem I P700 apoprotein A1.	0.992
D8QPQ3_SELML	psaB	D8QPQ3	C7B2K5	Uncharacterized protein.	Photosystem I P700 apoprotein A2.	0.991
D8QPQ3_SELML	psaC	D8QPQ3	C7B2J3	Uncharacterized protein.	Photosystem I subunit VII.	0.995
D8S8J0_SELML	D8QPQ3_SELML	D8S8J0	D8QPQ3	Uncharacterized protein.	Uncharacterized protein.	0.999
D8S8J0_SELML	D8SKS2_SELML	D8S8J0	D8SKS2	Uncharacterized protein.	Uncharacterized protein.	0.999
D8S8J0_SELML	D8TE48_SELML	D8S8J0	D8TE48	Uncharacterized protein.	NADH-ubiquinone oxidoreductase chain 4; Core subunit of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I) that is believed to belong to the minimal assembly required for catalysis. Complex I functions in the transfer of electrons from NADH to the respiratory chain. The immediate electron acceptor for the enzyme is believed to be ubiquinone.	0.952
D8S8J0_SELML	D8TE62_SELML	D8S8J0	D8TE62	Uncharacterized protein.	Uncharacterized protein.	0.975
D8S8J0_SELML	D8TE63_SELML	D8S8J0	D8TE63	Uncharacterized protein.	Uncharacterized protein.	0.898
D8S8J0_SELML	ndhD	D8S8J0	C7B2J2	Uncharacterized protein.	NADH dehydrogenase subunit 4.	0.952
D8S8J0_SELML	petD	D8S8J0	C7B2H7	Uncharacterized protein.	Cytochrome b6/f complex subunit IV.	0.872
D8S8J0_SELML	psaA	D8S8J0	C7B2K6	Uncharacterized protein.	Photosystem I P700 apoprotein A1.	0.996
D8S8J0_SELML	psaB	D8S8J0	C7B2K5	Uncharacterized protein.	Photosystem I P700 apoprotein A2.	0.995
D8S8J0_SELML	psaC	D8S8J0	C7B2J3	Uncharacterized protein.	Photosystem I subunit VII.	0.995