STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
serAUnannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family. (307 aa)    
Predicted Functional Partners:
serC
Unannotated protein; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. SerC subfamily.
 0.997
porA_1
Unannotated protein.
  
 
 0.918
ldhA
Unannotated protein; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
 
 
0.818
gpmI
Unannotated protein; Catalyzes the interconversion of 2-phosphoglycerate and 3- phosphoglycerate.
     
 0.806
udk
Unannotated protein.
 
 
  0.800
GCA_000427365_00117
Unannotated protein.
 
    0.795
thrA
Unannotated protein.
  
 0.726
maeB
Unannotated protein.
  
 
 0.713
rplF
Unannotated protein; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
   0.689
GCA_000427365_00019
Unannotated protein.
  
 
 0.652
Your Current Organism:
Rikenella microfusus
NCBI taxonomy Id: 880526
Other names: R. microfusus DSM 15922, Rikenella microfusus ATCC 29728, Rikenella microfusus DSM 15922, Rikenella microfusus JCM 2053, Rikenella microfusus str. DSM 15922, Rikenella microfusus strain DSM 15922
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.