STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_000427365_01370Unannotated protein. (309 aa)    
Predicted Functional Partners:
GCA_000427365_00084
Unannotated protein.
   
   0.852
acpA
Unannotated protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.
  
 0.838
hycE
Unannotated protein.
   
 
 0.816
czcD
Unannotated protein.
       0.774
nfrA2
Unannotated protein.
  
   0.720
GCA_000427365_00118
Unannotated protein.
   
   0.717
hycG
Unannotated protein.
   
   0.717
GCA_000427365_01658
Unannotated protein.
  
     0.492
GCA_000427365_01372
Unannotated protein.
       0.444
plsC
Unannotated protein; Belongs to the 1-acyl-sn-glycerol-3-phosphate acyltransferase family.
  
 0.430
Your Current Organism:
Rikenella microfusus
NCBI taxonomy Id: 880526
Other names: R. microfusus DSM 15922, Rikenella microfusus ATCC 29728, Rikenella microfusus DSM 15922, Rikenella microfusus JCM 2053, Rikenella microfusus str. DSM 15922, Rikenella microfusus strain DSM 15922
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.