Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0004Phosphoserine aminotransferase. (381 aa)    
Predicted Functional Partners:
EIO_0005
D-3-phosphoglycerate dehydrogenase.
 0.999
EIO_2866
Phosphoserine phosphatase SerB.
  
 
 0.973
EIO_0774
L-threonine synthase.
  
 0.949
EIO_1639
Putative cysteine synthase A.
  
 
 0.925
pdxA
4-hydroxythreonine-4-phosphate dehydrogenase.
     
 0.920
EIO_0897
Prephenate dehydratase.
  
  
 0.746
EIO_0841
Glyoxylate reductase.
 
  
 0.733
EIO_0544
3-phosphoshikimate 1-carboxyvinyltransferase protein.
  
  
 0.727
glyA
Serine hydroxymethyltransferase.
  
 
 0.667
EIO_0086
Chorismate mutase.
  
  
 0.594
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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