STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0005D-3-phosphoglycerate dehydrogenase. (531 aa)    
Predicted Functional Partners:
EIO_0004
Phosphoserine aminotransferase.
 0.999
gpmI
2,3-bisphosphoglycerate-independent phosphoglycerate mutase.
    
 0.908
rplF
50S ribosomal protein L6.
   
   0.783
rplQ
Ribosomal protein L17.
   
   0.773
EIO_2479
Bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein.
   
  
 0.749
rplV
Ribosomal protein L22.
    
 
 0.683
rplP
50S ribosomal protein L16.
   
   0.678
rplM
Ribosomal protein L13.
   
   0.670
EIO_0006
Putative urease-associated protein.
       0.668
EIO_0418
50S ribosomal protein L21.
   
   0.668
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.