STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0009Conserved hypothetical protein. (92 aa)    
Predicted Functional Partners:
EIO_0008
Band 7 protein.
 
  
 0.969
EIO_2288
DNA alkylation repair enzyme superfamily protein.
  
     0.548
dinB
DNA polymerase IV.
       0.542
EIO_2723
MarR family transcriptional regulator.
 
     0.516
EIO_1108
Aspartate aminotransferase.
  
     0.499
EIO_2568
N-acyl-L-homoserine lactone synthetase-like protein.
  
     0.498
EIO_2164
Sporulation domain-containing protein.
  
     0.494
EIO_2174
Conserved hypothetical protein.
  
     0.471
EIO_2569
Transcriptional regulator.
  
     0.469
EIO_1415
Kinase, pfkB family protein.
  
     0.447
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.