STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pyrFOrotidine 5'-phosphate decarboxylase. (231 aa)    
Predicted Functional Partners:
pyrE
Orotate phosphoribosyltransferase.
 
 
 0.999
pyrB
Aspartate carbamoyltransferase.
 
  
 0.969
EIO_1089
UMP kinase.
   
 
 0.943
carB
Carbamoyl-phosphate synthase large subunit.
  
  
 0.942
EIO_2158
Dihydroorotate dehydrogenase 2.
  
  
 0.942
EIO_2165
Uracil phosphoribosyltransferase.
  
 
 0.938
carA
Carbamoyl-phosphate synthase, small subunit.
  
  
 0.937
EIO_1193
5'-nucleotidase surE.
    
 0.917
EIO_2156
Ser/Thr protein phosphatase/nucleotidase, putative.
    
 0.903
mazG
MazG family protein.
     
  0.900
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.