STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0029Transcriptional regulator, GntR family. (228 aa)    
Predicted Functional Partners:
EIO_1822
GntR family transcriptional regulator.
  
     0.741
EIO_0030
C4-dicarboxylate-binding periplasmic protein.
 
     0.736
EIO_0028
Putative regulatory protein, GntR familiy.
 
    
0.690
EIO_1581
GntR family transcriptional regulator.
  
     0.676
EIO_1815
Transcriptional regulator, GntR family.
  
     0.671
EIO_2316
Transcriptional regulator, GntR family.
  
     0.665
EIO_1817
GntR family transcriptional regulator.
  
     0.648
EIO_1002
Transcriptional regulator, GntR family protein.
  
     0.638
EIO_0034
C4-dicarboxylate-binding periplasmic protein.
 
     0.631
matR
Transcriptional regulator (activator) protein.
  
     0.603
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.