Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
EIO_00323-dehydroquinate dehydratase. (150 aa)    
Predicted Functional Partners:
EIO_1082
3-dehydroquinate synthase.
 
 
 0.937
EIO_0026
4-hydroxyphenylpyruvate dioxygenase.
    
 0.933
EIO_0027
Putative shikimate/quinate 5-dehydrogenase.
  
 
 0.933
aroE
Shikimate 5-dehydrogenase.
 
 
 0.925
EIO_0552
3-dehydroquinate dehydratase, type II.
  
  
 
0.907
EIO_0033
IclR family transcriptional regulator.
       0.773
EIO_0031
Putative TRAP-type C4-dicarboxylate transporter, large permease subunit (DctM).
       0.737
EIO_0034
C4-dicarboxylate-binding periplasmic protein.
       0.709
EIO_0030
C4-dicarboxylate-binding periplasmic protein.
       0.556
tig
Trigger factor.
  
  
 0.517
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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