Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0033IclR family transcriptional regulator. (292 aa)    
Predicted Functional Partners:
EIO_2319
Epimerase/dehydratase.
     0.871
EIO_0032
3-dehydroquinate dehydratase.
       0.773
EIO_0031
Putative TRAP-type C4-dicarboxylate transporter, large permease subunit (DctM).
       0.737
EIO_0034
C4-dicarboxylate-binding periplasmic protein.
       0.709
EIO_1404
Triose-phosphate isomerase.
 
    
 0.685
EIO_0030
C4-dicarboxylate-binding periplasmic protein.
       0.556
rplQ
Ribosomal protein L17.
 
      0.543
EIO_0029
Transcriptional regulator, GntR family.
 
     0.450
EIO_0028
Putative regulatory protein, GntR familiy.
 
     0.419
EIO_0730
50S ribosomal protein L25/general stress protein Ctc.
  
  
 0.410
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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