Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0037Alkaline phosphatase. (477 aa)    
Predicted Functional Partners:
EIO_1699
Thiamine-phosphate pyrophosphorylase, putative.
    
  0.901
EIO_2706
Translocase.
    
 
 0.830
EIO_2759
Preprotein translocase subunit SecB.
    
 
 0.783
tig
Trigger factor.
    
 
 0.782
EIO_2516
Alkaline phosphatase.
 
    0.689
EIO_0160
Phosphate ABC transporter, periplasmic phosphate-binding protein.
  
  
 0.616
EIO_2841
Chaperone protein DnaK.
   
 
 0.612
EIO_0038
Hypothetical protein.
       0.580
EIO_0039
Hypothetical protein.
       0.580
EIO_0040
Hypothetical protein.
       0.580
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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