STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0055dTDP-4-dehydrorhamnose reductase. (283 aa)    
Predicted Functional Partners:
EIO_0054
Glucose-1-phosphate thymidylyltransferase.
  
 0.999
EIO_2669
dTDP-4-dehydrorhamnose 3,5-epimerase.
 
 0.999
EIO_2670
dTDP-glucose 4,6-dehydratase.
 
 0.996
EIO_0808
Glycosyl transferase family 2.
 
  
 0.843
xanB
Mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase.
  
  
 0.759
EIO_1379
2'-deoxycytidine 5'-triphosphate deaminase.
   
    0.609
EIO_1852
Putative bifunctional glycosyltransferase, forming beta-glycosyl and alpha-glycosyl linkages protein.
  
  
 0.569
EIO_0142
UDP-galactopyranose mutase.
  
  
 0.559
EIO_2346
Lipopolysaccharide biosynthesis protein-like protein.
 
  
 0.502
gtaB
UTP--glucose-1-phosphate uridylyltransferase.
    
 0.487
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.