Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
metHProbable 5-methyltetrahydrofolate--homocysteine methyltransferase. (1248 aa)    
Predicted Functional Partners:
metF
metF-like protein.
  
 
 0.997
EIO_1037
O-succinylhomoserine sulfhydrylase.
  
 
 0.984
EIO_2303
5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase.
  
 
 0.977
metK
S-adenosylmethionine synthetase.
  
 
 0.966
EIO_1625
Glycine cleavage system T protein.
  
 
 0.966
EIO_2775
Adenosylhomocysteinase.
  
 
 0.966
EIO_2461
Homoserine dehydrogenase.
  
 
 0.954
glyA
Serine hydroxymethyltransferase.
     
 0.943
EIO_0617
Aminotransferase, class I and II.
     
 0.938
EIO_1794
Aspartate/tyrosine/aromatic aminotransferase protein.
     
 0.938
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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