STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0078DEAD/DEAH box helicase domain protein. (426 aa)    
Predicted Functional Partners:
EIO_2848
Polyribonucleotide nucleotidyltransferase.
 
 0.963
rplD
50S ribosomal protein L4.
   
 0.951
EIO_2598
Elongation factor G.
   
 0.951
rplJ
50S ribosomal protein L10.
   
 0.948
EIO_2182
Ornithine carbamoyltransferase.
  
 0.941
EIO_1716
Ribosomal RNA large subunit methyltransferase J.
   
 0.940
rplW
Ribosomal protein L23.
   
 0.904
rpmD
Ribosomal protein L30.
   
 0.890
EIO_2594
50S ribosomal protein L3.
   
 0.890
atpG
F0F1 ATP synthase subunit gamma.
  
 0.881
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.