Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_008250S ribosomal protein L19. (125 aa)    
Predicted Functional Partners:
EIO_0083
tRNA (guanine-N1-)-methyltransferase.
  
 0.998
rpsP
Ribosomal protein S16.
 
 
 0.998
EIO_0081
Ribosomal protein L31.
  
 
 0.997
EIO_0418
50S ribosomal protein L21.
 
 0.995
rpoC
DNA-directed RNA polymerase, beta' subunit.
 
 
 0.995
EIO_0206
50S ribosomal protein L20.
 
 0.994
rplI
Ribosomal protein L9.
  
 0.993
rpsB
30S ribosomal protein S2.
 
 
 0.993
rplJ
50S ribosomal protein L10.
 
 
 0.993
rplA
50S ribosomal protein L1.
 
 
 0.993
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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