Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
EIO_0084Putative 16S rRNA processing protein. (168 aa)    
Predicted Functional Partners:
EIO_0083
tRNA (guanine-N1-)-methyltransferase.
 
  
 0.992
rpsP
Ribosomal protein S16.
 
  
 0.985
EIO_0082
50S ribosomal protein L19.
 
  
 0.984
rpoC
DNA-directed RNA polymerase, beta' subunit.
  
  
 0.923
rpsB
30S ribosomal protein S2.
  
  
 0.921
rpsR
Ribosomal protein S18.
   
  
 0.920
rpsF
30S ribosomal protein S6.
   
  
 0.918
EIO_2600
30S ribosomal protein S12.
   
  
 0.918
rpsK
30S ribosomal protein S11.
   
  
 0.915
EIO_2572
DNA-directed RNA polymerase alpha subunit.
   
  
 0.914
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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