Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
EIO_0091ArsR family transcriptional regulator. (113 aa)    
Predicted Functional Partners:
EIO_0092
ATP synthase F0, subunit I.
       0.683
atpB
ATP synthase F0, A subunit.
       0.681
EIO_1288
Conserved hypothetical protein.
 
  
 0.600
EIO_0094
ATP synthase subunit C.
       0.535
EIO_0095
ATP synthase F0, B' subunit.
       0.437
atpF
ATP synthase F0, B subunit.
       0.437
EIO_0169
Helix-turn-helix domain containing protein, type 11.
  
     0.414
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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