Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0105Transcriptional regulator, Fur family. (147 aa)    
Predicted Functional Partners:
EIO_0104
3-hydroxydecanoyl-(acyl carrier protein) dehydratase.
 
  
 0.666
EIO_0103
3-oxoacyl-(acyl-carrier-protein) synthase.
       0.599
EIO_2384
Thiol-specific antioxidant protein.
  
  
 0.572
EIO_2572
DNA-directed RNA polymerase alpha subunit.
   
 
 0.561
EIO_2430
Glutamine-pyruvate aminotransferase.
     
 0.534
EIO_2332
CoA-binding domain protein.
  
    0.505
rpoC
DNA-directed RNA polymerase, beta' subunit.
  
   0.476
EIO_0959
Ferric uptake regulator family protein.
      
 0.439
arsC-2
Arsenate reductase.
 
   
 0.436
mucS
Transcriptional regulator, MarR family protein.
  
  
 0.429
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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