Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
hmuTHemin-binding periplasmic protein hmuT. (102 aa)    
Predicted Functional Partners:
EIO_0164
HmuT protein.
     0.994
hmuV
Hemin import ATP-binding protein hmuV.
 
 
 0.989
EIO_0165
Hemin degrading factor.
 
  
 0.989
EIO_0162
Transport system permease protein.
 
 
 0.959
EIO_1425
Heme acquisition protein hasR.
 
  
 0.782
EIO_1428
Periplasmic hemin-binding protein.
  
     0.775
EIO_0166
Conserved hypothetical protein.
 
     0.750
EIO_2777
Heme acquisition protein hasR.
 
  
 0.674
EIO_0160
Phosphate ABC transporter, periplasmic phosphate-binding protein.
       0.497
EIO_1322
TonB-dependent receptor plug.
 
  
 0.481
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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