STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0169Helix-turn-helix domain containing protein, type 11. (222 aa)    
Predicted Functional Partners:
EIO_0170
Twin-arginine translocation protein, TatA/E family.
  
    0.623
rpoZ
DNA-directed RNA polymerase omega subunit.
    
   0.622
EIO_2572
DNA-directed RNA polymerase alpha subunit.
    
   0.622
rpoC
DNA-directed RNA polymerase, beta' subunit.
    
   0.622
rpoB
DNA-directed RNA polymerase, beta subunit.
    
 
 0.622
EIO_0171
Sec-independent protein translocase protein tatB-like protein.
  
    0.507
tatC
Twin-arginine translocation protein TatC.
       0.502
EIO_0173
Conserved hypothetical protein.
       0.502
EIO_0168
Conserved hypothetical protein.
       0.491
EIO_0167
Peptide chain release factor 3.
       0.418
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.