Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EIO_0198Monooxygenase, FAD-binding protein. (381 aa)    
Predicted Functional Partners:
EIO_0197
dnaK suppressor protein, putative.
       0.813
EIO_2291
Conserved hypothetical protein.
  
 0.750
EIO_0213
RpsU-divergently transcribed.
   
 0.649
EIO_2349
Branched-chain amino acid ABC transporter, periplasmic substrate-binding protein.
   
  
 0.620
EIO_2391
2-polyprenylphenol 6-hydroxylase.
  
 0.499
truB
tRNA pseudouridine synthase B.
     
  0.493
EIO_0196
Conserved hypothetical protein.
       0.491
EIO_0195
Peptidase, M48 family, putative.
       0.490
EIO_0694
Endonuclease.
    
 0.466
EIO_1648
Cytochrome P450 family protein.
  
 
 0.450
Your Current Organism:
Ketogulonicigenium vulgare
NCBI taxonomy Id: 880591
Other names: K. vulgare Y25, Ketogulonicigenium vulgare Y25, Ketogulonicigenium vulgare str. Y25, Ketogulonicigenium vulgare strain Y25
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